I'm pretty sure it's the same problem we encountered! Here's what happens...
When shooting with certain lenses on the 5D in AI Servo mode, at high ISO this causes interference.
I have NO idea how this even is a possibility but it's true...I did some research and I found out many people have the same problem.
I checked, and it only happens with our 50mm f1.4 lens on the 5D & AI Servo turned on. I heard that other lenses (even some L) cause the same thing!!!
Read here:
http://www.dpreview.com/reviews/canoneos5d/page25.asp (scroll to the bottom)
I don't understand how Canon could allow this to go on. I read that many people have complained to them, but they apparently aren't doing anything about it?!
If this is the same problem as yours, then do as I do...if I'm shooting with the lens that does it...don't shoot with AI Servo

Cheers,
Bartek